Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability
active 2024-04-16 → 2026-04-16 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 731 days from 2024-04-16 to 2026-04-16. Pushes: 130 total, peak 12 in a day. Pull requests: 29 total, peak 4 in a day. Issues: 25 total, peak 6 in a day. Comments: 18 total, peak 12 in a day. Stars: 4 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
Recent activity
Latest issues, pull requests and releases
- Issue comment#119laurapiro172026-04-16 21:25Separate ancestry attribute into race and ethnicity (closes #77)
- Pull request#119laurapiro172026-03-29 23:48
- Issue comment#115shbrief2026-01-19 17:12Refactor curatedMetagenomicData ETL pipeline with orchestration, validation, and automation
- Issue#114krlong682026-01-13 19:31Merge the metadata validator to master branch of curatedMetagenomicDataCuration GH repo
- Issue comment#110shbrief2026-01-05 05:33Deprecate `cancer_subtype` column
- Issue comment#103shbrief2026-01-05 05:31Metadata Validator
- Issue#114shbrief2026-01-05 05:30Merge the metadata validator to master branch of curatedMetagenomicDataCuration GH repo
- Issue#114shbrief2026-01-05 05:30Merge the metadata validator to master branch of curatedMetagenomicDataCuration GH repo
- Issue#113shbrief2026-01-05 05:28Create a vignette for `tree_filter`
- Issue#111shbrief2026-01-05 05:26Create vignette to browse disease/cancer information of cBioPortal
- Issue#111shbrief2026-01-05 05:26Create vignette to browse disease/cancer information of cBioPortal
- Issue#110shbrief2025-12-22 19:37Deprecate `cancer_subtype` column
- Issue#109shbrief2025-12-22 19:34disease/cancer related harmonization cleanup
- Issue#109shbrief2025-12-22 19:34disease/cancer related harmonization cleanup
- Issue#108shbrief2025-12-22 19:21Formatting error in the `curated_disease_cancer_type_detailed`
- Issue#101krlong682025-12-19 23:31Make all the ODM dictionaries in OWL format
- Issue comment#97shbrief2025-12-08 18:52Decide ontology to use for our data harmonization
- Issue comment#97seandavi2025-11-24 22:28Decide ontology to use for our data harmonization
- Issue#104shbrief2025-11-24 17:33Two `NA` values for `curation_id`
- Issue#102shbrief2025-11-24 17:29Make `tree_filter` to work without stored ancestry terms
- Issue#101shbrief2025-11-24 17:27Make all the ODM dictionaries in OWL format
- Issue#99shbrief2025-11-24 17:20Converting datasets into plain text files (Programmable)
- Issue#78shbrief2025-11-24 17:19Add additional cBioPortalData `treatment_*` attributes as composite attributes
- Issue#96shbrief2025-11-24 16:37Non-existing columns included in the harmonization plan
- Issue#93shbrief2025-07-14 01:03Update/consolidate cMD `target_condition`
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 4 stars here means stars gained during the window, not the repo's star count.