ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
active 2023-08-20 → 2026-05-14 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 999 days from 2023-08-20 to 2026-05-14. Pushes: 6 total, peak 1 in a day. Pull requests: 2 total, peak 1 in a day. Issues: 30 total, peak 3 in a day. Comments: 38 total, peak 9 in a day. Stars: 26 total, peak 1 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| xavierdidelot | 44 | 6 | 1 | 22 |
| tbazilegith | 8 | 0 | 0 | 6 |
| xonq | 5 | 0 | 0 | 3 |
| jianshu93 | 4 | 0 | 0 | 3 |
| maxibor | 3 | 0 | 0 | 1 |
| PaulineGachanja | 3 | 0 | 0 | 2 |
| OKyne1 | 2 | 0 | 0 | 0 |
| goshng | 1 | 0 | 0 | 0 |
| sbenvari | 1 | 0 | 0 | 1 |
| juliaped | 1 | 0 | 0 | 0 |
| lagphase | 1 | 0 | 0 | 0 |
| artmisk13 | 1 | 0 | 0 | 0 |
| moorembioinfo | 1 | 0 | 1 | 0 |
| 17863952296 | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#160xavierdidelot2025-02-13 15:19r/m calculation for branches
- Issue#160OKyne12025-02-13 14:35r/m calculation for branches
- Issue comment#159xavierdidelot2025-01-29 16:14Some tree branches did not have statistical parameters output
- Issue#159xavierdidelot2025-01-29 16:14Some tree branches did not have statistical parameters output
- Issue#159artmisk132025-01-29 15:58Some tree branches did not have statistical parameters output
- Issue comment#158xavierdidelot2025-01-21 09:31Calculating r/m for tree subsections
- Issue#158xavierdidelot2025-01-21 09:31Calculating r/m for tree subsections
- Issue#158OKyne12025-01-20 14:31Calculating r/m for tree subsections
- Issue#157xavierdidelot2025-01-09 17:01Question: outgroup inclusion and CFML
- Issue#157maxibor2025-01-09 14:11Question: outgroup inclusion and CFML
- Issue comment#156xonq2024-10-02 16:59ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue comment#156xavierdidelot2024-10-02 16:41ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue comment#156xonq2024-10-02 15:52ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue comment#156xavierdidelot2024-10-02 15:07ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue#156xavierdidelot2024-10-02 15:07ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue comment#156xavierdidelot2024-10-02 10:26ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue#156xonq2024-10-01 20:03ERROR: Number of nodes in Newick tree inconsistent with that expected
- Issue comment#155xavierdidelot2024-07-05 08:30Correlate positions between input alignment/graphical output
- Issue#155xavierdidelot2024-07-05 08:30Correlate positions between input alignment/graphical output
- Issue#155juliaped2024-07-05 06:57Correlate positions between input alignment/graphical output
- Issue comment#153xonq2024-06-30 20:37Segmentation fault after reading tree
- Issue comment#154PaulineGachanja2024-06-28 08:46N/A on posterior means on the per branch model
- Issue comment#154xavierdidelot2024-06-28 08:14N/A on posterior means on the per branch model
- Issue#154xavierdidelot2024-06-28 08:14N/A on posterior means on the per branch model
- Issue comment#153xavierdidelot2024-06-28 08:07Segmentation fault after reading tree
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 26 stars here means stars gained during the window, not the repo's star count.