Batch effect adjustment based on negative binomial regression for RNA sequencing count data
active 2023-08-15 → 2026-04-17 (UTC)
Activity over time
Daily event counts in the loaded window
Line chart, 977 days from 2023-08-15 to 2026-04-17. Pushes: 0 total, peak 0 in a day. Pull requests: 0 total, peak 0 in a day. Issues: 9 total, peak 2 in a day. Comments: 10 total, peak 3 in a day. Stars: 66 total, peak 2 in a day.
- Pushes
- Pull requests
- Issues
- Comments
- Stars
Stars, PRs, issues and forks are under-captured in the later part of this window. GH Archive progressively stopped capturing non-push events during 2026 — −95% or worse by the end of the window. Every series here except Pushes fades for that reason, so a decline above reflects the archive, not this repository. Pushes stay reliable throughout, so read them, and the contributor counts derived from them, as the real signal. Data health has the measurements.
Top contributors
Pushes, PRs, issues, reviews and comments — stars and forks excluded, so this is contribution rather than popularity
| Contributor | Contributions | Pushes | PRs | Comments |
|---|---|---|---|---|
| MateFlasche | 2 | 0 | 0 | 1 |
| Joyjoyjoyc | 2 | 0 | 0 | 2 |
| SimonSchlumbohm | 2 | 0 | 0 | 1 |
| rohanr3ji | 2 | 0 | 0 | 2 |
| ucbtsh6 | 1 | 0 | 0 | 0 |
| zonzero | 1 | 0 | 0 | 0 |
| ATpoint | 1 | 0 | 0 | 1 |
| tkiehl | 1 | 0 | 0 | 1 |
| kvn95ss | 1 | 0 | 0 | 0 |
| Chenjlin28 | 1 | 0 | 0 | 0 |
| pezhmansafdari | 1 | 0 | 0 | 0 |
| f12345zxcvbnm2 | 1 | 0 | 0 | 1 |
| flowerdna | 1 | 0 | 0 | 0 |
| Aravind-sunda | 1 | 0 | 0 | 1 |
| woodyNsinbad | 1 | 0 | 0 | 0 |
Recent activity
Latest issues, pull requests and releases
- Issue#46pezhmansafdari2025-06-17 10:01running Combat-seq with SVA resaults
- Issue comment#35rohanr3ji2025-05-17 10:43running combat-seq with DESeq2
- Issue comment#29rohanr3ji2025-05-17 10:38ComBat_seq took a very long time
- Issue comment#45MateFlasche2025-03-13 17:25full_mod argument purpose unclear
- Issue#45MateFlasche2025-03-13 17:07full_mod argument purpose unclear
- Issue#44flowerdna2024-12-19 03:46ComBat_seq reruns a list rather a matrix if rm=0
- Issue comment#20tkiehl2024-11-14 16:05ComBat-Seq correction creating very large count values--cannot feed into DESeq2
- Issue comment#42Joyjoyjoyc2024-05-15 10:56The covariates are confounded
- Issue comment#42SimonSchlumbohm2024-05-15 10:43The covariates are confounded
- Issue comment#42Joyjoyjoyc2024-05-15 05:18The covariates are confounded
- Issue#43ucbtsh62024-03-25 15:53Can i nordmalise without having commvon sample between two repeats
- Issue#42SimonSchlumbohm2024-03-25 10:37The covariates are confounded
- Issue comment#20f12345zxcvbnm22024-03-25 07:13ComBat-Seq correction creating very large count values--cannot feed into DESeq2
- Issue comment#20Aravind-sunda2024-03-19 14:03ComBat-Seq correction creating very large count values--cannot feed into DESeq2
- Issue#41kvn95ss2024-01-26 15:28Batch effect present for some biotypes after running CombatSeq
- Issue#40Chenjlin282023-11-30 13:51no data rows with required number of counts
- Issue comment#39ATpoint2023-09-28 11:51A strange problem
- Issue#39zonzero2023-08-25 12:33A strange problem
- Issue#38woodyNsinbad2023-08-16 10:31plus one
Totals cover only the window loaded into ClickHouse and count events, not GitHub's lifetime totals — 66 stars here means stars gained during the window, not the repo's star count.